Thanks for the response.

I can get RB to recognize the Eye TV remote.

See screen shot here: http://img706.imageshack.us/img706/5885/menug.jpg

However when I do this the Eye TV remote will not respond to input in any application, not even Eye TV.

I am also not able to access the RB menu.

I followed these instructions:

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Setup

No setup is needed. When both EyeTV and Remote Buddy are running at the same time, the first press of a button on a supported remote control (and received via a compatible EyeTV receiver) automatically adds it to Remote Buddy. You'll have to press a button on the remote again when you start EyeTV again the next time.

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And based on the "Compatibility matrix" it looks like the most current build of Eye TV is not supported. 
It indicates 3.0.4 and I am using 3.2.1(5721).

I may not be understanding this correctly.

Thanks again.

Justin