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Hello Jc,
thanks for reporting!
If the DMR remote does work with Remote Buddy, the fact that the 
Apple Remote does not work for you can only mean that there is a 
problem in Remote Buddy recognizing your remote's signals. Since the 
Apple Remotes embed a unique number within their IR signals, it may 
be possible, that I included part of these into the pattern used for 
recognition.
May I send you a debug version that outputs the raw signals it 
receives, so I can have a closer look at how they differ from my two 
Apple Remotes?
This should allow me to solve the problem pretty easily and quickly :-)
Best regards, 
Felix